North Luzon
| Angat Watershed | Norzagaray-San Jose del Monte, Bulacan |
| Magat Watershed | Ifugao, Isabela and Nueva Viscaya |
| Pantabangan-Carranglan Watershed | Nueva Ecija, Nueva Viscaya and Aurora |
| San Roque Watershed | Pangasinan and Benguet |
| Upper Agno River Watershed | Benguet, Ifugao, Mountain Province and Nueva Viscaya |
South Luzon
| Buhi-Barit Watershed | Albay and Camarines Sur |
| Caliraya-Lumot Watershed | Cavinte, Kalayaan, Lumban and Paete, Laguna |
| Makiling-Banahaw Watershed | Laguna, Batangas and Quezon |
| Tiwi Watershed | Albay and Camarines Sur |
Mindanao
| Lake Lanao Agus River Watershed | Lanao del Norte and Lanao del Sur |
| Pulangi Watershed | Bukidnon |


